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Release platform 2026.06

Florian Thonier
2 min read
#release #platform #features
Release platform 2026.06

This changelog concerns the Vidjil web application, client and server. We are using continuous integration and deployment, some features may be pushed on our servers between these releases.

Complete list of issues and changes for this release can be found in GitLab’s milestone.

Web 2026-6

Improve analysis

  • MRD script have been significantly improved and deployed, with enhancements in both the script itself and the interface to display these new results
  • The prefuse step has been move to the in-process step. It allows it to be launched and packaged with main analysis step, just after the Vidjil call. This fixes 2 misleading behaviors of our server:
    • In runs with a large number of samples, each prefuse step was launched every time a new result was available.
    • Custom analysis opening only considered the results at the end of in-process (mainly vidjil) and not prefuse augmented analysis.
  • Log of an analysis, avaible by clincking on COMPLETED/FAILED button, have been redesigned. Now you will have a list of logs separated for each in-process part of the analysis.
  • A new vidjil format version (2026.6) have been released. It include new fields supplementary_data that allow to store some external data computed by prefuse/postfuse scripts. These data will now be displayed in clonotype and sample information panels.

Bug fixes

  • Primers reset between each analysis loading have been fixed
  • IMGT calling have been fixed to use new form value

Security

  • Some security fixes have been made.
  • An automatic dependance audit has been added to docker image build of python dependancies
  • Cookies rights have been limited to improve security

Technical

  • Prefuse step has been moved at in-process step. See more details in improve analysis above.
  • API script now allows to launch a get reads process directly from command line. This grep reads is based on grep tools and return every read with vidjil window given in parameter
  • Administrator table now has a js sort columns capability on tables of preprocess, process, groups and users.
  • Vidjil format has evolved to 2026-6 to allow the addition of new external or complementary analysis
  • Fuse script has been improved to works with 2026-6 vidjil format, without breaking previous compatibilities
  • A dedicated vidjil file prettyfier has been added as tools/format_vidjil.py. It allows to give a compacted, organized and human readable vision on a vidjil results file.

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