Release Algo 2026.06

This changelog concerns vijil-algo, the algorithmic part (C++) of the Vidjil platform.

Algo 2026-06

Added support for WASM !1708
Improved read count approximation in input FASTA files !1715
The start and end positions of framework and complimentary-determining regions (FRs & CDRs) located on clonotypes are now output in .vidjil and .tsv files, along with possible warnings if their length is abnormal #1841, !1730
Fixed AIRR’s .tsv CDR3 start and end field names !1733
When no clone was found during analysis or --no-vidjil was passed through the command line, an empty array ([]) is now output instead of null #1773, !1740
Fixed occasionally off-by-1 CDR3 / JUNCTION positions !1726
More recent g++ & clang++ compiler versions are now tested with vidjil-algo !1757
Fixed missing key for unexpected germline #5459, !1758
The minimum required coverage to compute the consensus sequence can now be configured through the command line with --min-coverage-consensus #5419, !1756
K-mers extracted from genes to search for that are common with those from genes not to search for on reads are now systematically removed from the index, yielding more accurate results #5436, !1748